Finally got her back today - everything seems sorted.
Comment from my wife: very smooth idling and great clutch action & gearshift
I'll get her into low-range over the weekend (the Patrol, not my wife

) and listen closely.
A big commendation to Michael Le Sueur from New Engineering (20 Pisces Crescent, Brackenfell 021-981-9630) who picked up the gearbox & flywheel from ANG, did the Flywheel conversion, fitted the clutch, repaired the spacer and returned it to ANG on Monday - he was great keeping me updated of progress and patiently answering all my questions.
Also to Gregory from ANG Service Centre (23 A Silverstone Road Killarney Gardens 021-556-2424)- great service at a very competitive price and commitment to excellence. They removed the gearbox (5 men) and then refitted it together with a new rear-main seal after having the rear propshaft serviced and re-balanced.
PS. According to Gregory, the next time they work on the gearbox of a Patrol, they'll remove the engine.